nbnode.specific_analyses.intraassay package

Subpackages

• nbnode.specific_analyses.intraassay.sims package
  • Submodules
  • nbnode.specific_analyses.intraassay.sims.sim00 module
    • sim00_baseline()
  • nbnode.specific_analyses.intraassay.sims.sim01 module
    • sim01_double_tcm()
  • nbnode.specific_analyses.intraassay.sims.sim02 module
    • sim02_temra()
  • nbnode.specific_analyses.intraassay.sims.sim03 module
    • sim03_m_sd()
  • Module contents

Submodules

nbnode.specific_analyses.intraassay.gate_init module

nbnode.specific_analyses.intraassay.gate_init.gate_init(sample_list: List[str] | None = None) → Tuple[NBNode, DataFrame, FlowSimulationTreeDirichlet]

Gate the intraassay samples and generate the Dirichlet-based simulation.

Parameters:

sample_list (List[str], optional) – If given, only the samples with the file names indices are gated. Defaults to None.

Returns:

The gated celltree, the gated counts and the Dirichlet-based simulation.

Return type:

Tuple[NBNode, pd.DataFrame, FlowSimulationTreeDirichlet]

Module contents