Index

A

alpha_all (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet property)

apply() (nbnode.nbnode.NBNode method) astype_math_node_attribute() (nbnode.nbnode.NBNode method)

B

BaseFlowSimulationTree (class in nbnode.simulation.FlowSimulationTree)

both_iterator() (nbnode.nbnode.NBNode method)

C

copy_structure() (nbnode.nbnode.NBNode method)

count() (nbnode.nbnode.NBNode method) count_celltree_df() (in module nbnode.apply.count_celltree_df)

D

data (nbnode.nbnode.NBNode property)

do_cutoff() (nbnode.nbnode.NBNode static method)

E

edge_label_fun() (nbnode.nbnode.NBNode static method) eq_structure() (nbnode.nbnode.NBNode method) estimate_cell_distributions() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method)

estimate_population_distribution() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree static method) (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet static method) export_counts() (nbnode.nbnode.NBNode method) export_dot() (nbnode.nbnode.NBNode method)

F

find_dirname_above() (in module nbnode.testutil.helpers) find_dirname_above_currentfile() (in module nbnode.testutil.helpers)

flatten() (in module nbnode.plot.utils) FlowSimulationTreeDirichlet (class in nbnode.simulation.FlowSimulationTree) frame_cov() (in module nbnode.nbnode_util)

G

gate_csv() (in module nbnode.apply.gate_csv) gate_init() (in module nbnode.specific_analyses.intraassay.gate_init) generate_populations() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method)

get_name_full() (nbnode.nbnode.NBNode method) graph_from_dot() (nbnode.nbnode.NBNode method)

I

id_preds() (nbnode.nbnode.NBNode method)

insert_nodes() (nbnode.nbnode.NBNode method)

J

join() (nbnode.nbnode.NBNode method)

L

LinearShiftedColormap (class in nbnode.plot.utils)

M

mean_dist_fun() (in module nbnode.simulation.TreeMeanDistributionSampler) mean_leafs (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet property) merge_leaf_nodes() (in module nbnode.utils.merge_leaf_nodes) module nbnode nbnode.apply nbnode.apply.count_celltree_df nbnode.apply.gate_csv nbnode.apply.gate_pointcloud nbnode.io nbnode.io.pickle_open_dump nbnode.nbnode nbnode.nbnode_trees nbnode.nbnode_util nbnode.plot nbnode.plot.shifted_colormap nbnode.plot.utils nbnode.simulation nbnode.simulation.FlowSimulationTree nbnode.simulation.save_sample nbnode.simulation.sim_proportional nbnode.simulation.sim_target nbnode.simulation.TreeMeanDistributionSampler nbnode.simulation.TreeMeanRelative nbnode.specific_analyses nbnode.specific_analyses.intraassay nbnode.specific_analyses.intraassay.gate_init nbnode.specific_analyses.intraassay.sims nbnode.specific_analyses.intraassay.sims.sim00 nbnode.specific_analyses.intraassay.sims.sim01 nbnode.specific_analyses.intraassay.sims.sim02 nbnode.specific_analyses.intraassay.sims.sim03 nbnode.testutil nbnode.testutil.get_licenses nbnode.testutil.helpers nbnode.utils nbnode.utils.merge_leaf_nodes

N

nbnode module NBNode (class in nbnode.nbnode) nbnode.apply module nbnode.apply.count_celltree_df module nbnode.apply.gate_csv module nbnode.apply.gate_pointcloud module nbnode.io module nbnode.io.pickle_open_dump module nbnode.nbnode module nbnode.nbnode_trees module nbnode.nbnode_util module nbnode.plot module nbnode.plot.shifted_colormap module nbnode.plot.utils module nbnode.simulation module nbnode.simulation.FlowSimulationTree module nbnode.simulation.save_sample module nbnode.simulation.sim_proportional module

nbnode.simulation.sim_target module nbnode.simulation.TreeMeanDistributionSampler module nbnode.simulation.TreeMeanRelative module nbnode.specific_analyses module nbnode.specific_analyses.intraassay module nbnode.specific_analyses.intraassay.gate_init module nbnode.specific_analyses.intraassay.sims module nbnode.specific_analyses.intraassay.sims.sim00 module nbnode.specific_analyses.intraassay.sims.sim01 module nbnode.specific_analyses.intraassay.sims.sim02 module nbnode.specific_analyses.intraassay.sims.sim03 module nbnode.testutil module nbnode.testutil.get_licenses module nbnode.testutil.helpers module nbnode.utils module nbnode.utils.merge_leaf_nodes module ncells_from_percentages() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) new_pop_mean() (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method)

P

per_node_data_fun() (in module nbnode.nbnode_util) pickle_open_dump() (in module nbnode.io.pickle_open_dump) plot_save_unified() (in module nbnode.plot.utils) pop_alpha() (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method) pop_leafnode_names() (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method)

pop_mean() (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method) precision (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet property) predict() (nbnode.nbnode.NBNode method) prediction_str() (nbnode.nbnode.NBNode method) pretty_print() (nbnode.nbnode.NBNode method) PseudoTorchDistributionNormal (class in nbnode.simulation.TreeMeanDistributionSampler)

R

remove_population() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) (nbnode.simulation.FlowSimulationTree.FlowSimulationTreeDirichlet method)

reset_counts() (nbnode.nbnode.NBNode method) reset_ids() (nbnode.nbnode.NBNode method) reset_populations() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method)

S

sample() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) (nbnode.simulation.TreeMeanDistributionSampler.PseudoTorchDistributionNormal method) (nbnode.simulation.TreeMeanDistributionSampler.TreeMeanDistributionSampler method) (nbnode.simulation.TreeMeanRelative.TreeMeanRelative method) sample_customize() (nbnode.simulation.TreeMeanRelative.TreeMeanRelative method) sample_populations() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) save_sample() (in module nbnode.simulation.save_sample) set_DotExporter_ids() (nbnode.nbnode.NBNode method)

set_seed() (nbnode.simulation.FlowSimulationTree.BaseFlowSimulationTree method) shifted_colormap() (in module nbnode.plot.shifted_colormap) sim00_baseline() (in module nbnode.specific_analyses.intraassay.sims.sim00) sim01_double_tcm() (in module nbnode.specific_analyses.intraassay.sims.sim01) sim02_temra() (in module nbnode.specific_analyses.intraassay.sims.sim02) sim03_m_sd() (in module nbnode.specific_analyses.intraassay.sims.sim03) sim_proportional() (in module nbnode.simulation.sim_proportional) sim_target() (in module nbnode.simulation.sim_target) single_prediction() (nbnode.nbnode.NBNode method)

T

tree_complete_aligned() (in module nbnode.nbnode_trees) tree_complete_aligned_trunk() (in module nbnode.nbnode_trees) tree_complete_aligned_v2() (in module nbnode.nbnode_trees) tree_complete_cell() (in module nbnode.nbnode_trees) tree_complex() (in module nbnode.nbnode_trees) tree_simple() (in module nbnode.nbnode_trees)

tree_simple_cutoff() (in module nbnode.nbnode_trees) tree_simple_cutoff_mixed() (in module nbnode.nbnode_trees) tree_simple_cutoff_NOTWORKING() (in module nbnode.nbnode_trees) tree_simpleB() (in module nbnode.nbnode_trees) TreeMeanDistributionSampler (class in nbnode.simulation.TreeMeanDistributionSampler) TreeMeanRelative (class in nbnode.simulation.TreeMeanRelative)